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2019 Publications

Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues

The Plant Cell

December 30, 2019

Kyaw Aung, Panya Kim, Zhongpeng Li, Anna Joe, Brian Kvitko, James R. Alfano, Sheng Yang He. "Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues."

doi: 10.1105/tpc.19.00707

To Be or Not to Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen's Response to Different Hosts To Be or Not to Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen's Response to Different Hosts

The Plant Cell

December 18, 2019

Saima Shahid. "To Be or Not to Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen's Response to Different Hosts."

doi: 10.1105/tpc.19.00976

Fusarium Virguliforme Transcriptional Plasticity Is Revealed by Host Colonization of Corn vs. Soybean Fusarium virguliforme Transcriptional Plasticity Is Revealed by Host Colonization of Corn vs. Soybean

The Plant Cell

December 18, 2019

Kyaw Aung, Panya Kim, Zhongpeng Li, Anna Joe, Brian Kvitko, James R. Alfano, Sheng Yang He. "Fusarium virguliforme Transcriptional Plasticity Is Revealed by Host Colonization of Corn vs. Soybean."

doi: 10.1105/tpc.19.00697

Challenging battles of plants with phloem-feeding insects and prokaryotic pathogens Challenging battles of plants with phloem-feeding insects and prokaryotic pathogens

PNAS

November 11, 2019

Yanjuan Jiang, Chuan-Xi Zhang, Rongzhi Chen, and Sheng Yang He. "Challenging battles of plants with phloem-feeding insects and prokaryotic pathogens."

doi: 10.1073/pnas.1915396116

Locally-adapted Mimulus ecotypes differentially impact rhizosphere bacterial and archaeal communities in an environment-dependent manner Locally-adapted Mimulus ecotypes differentially impact rhizosphere bacterial and archaeal communities in an environment-dependent manner

Phytobiomes Journal

November 8, 2019

Bowsher, Kearns, Popovic, Lowry and Shade. "Locally-adapted Mimulus ecotypes differentially impact rhizosphere bacterial and archaeal communities in an environment-dependent manner."

doi: 10.1094/PBIOMES-05-19-0026-R

Predicting Adult Complex Traits from Early Development Transcript Data in Maize Predicting Adult Complex Traits from Early Development Transcript Data in Maize

The Plant Cell

October 29, 2019

Sunil Kumar Kenchanmane Raju, "Predicting Adult Complex Traits from Early Development Transcript Data in Maize."

doi: 10.1105/tpc.19.00833

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

Nature Communications

September 12, 2019

Grady, Sorensen, Stopnisek, Guittar & Shade. "Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops."

doi: 10.1038/s41467-019-11974-4

Plant-Microbe Interactions Facing Environmental Challenge Plant-Microbe Interactions Facing Environmental Challenge

Cell Host Microbe

August 14, 2019

Cheng, Zhang, and He. "Plant-Microbe Interactions Facing Environmental Challenge."

doi: 10.1016/j.chom.2019.07.009

Abundance-occupancy distributions to prioritize plant core microbiome membership Abundance-occupancy distributions to prioritize plant core microbiome membership

Current Opinion in Microbiology

June, 2019

Shade and Stopnisek. "Abundance-occupancy distributions to prioritize plant core microbiome membership." Volume 49: 50-28.

doi: 10.1016/j.mib.2019.09.008

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient

PNAS

May 17, 2019

Lowry, Lovell, Shang, Bonnette, Fay, Mitchell, Lloyd-Reilley, Bob, Wu, Rouquette, Wynia, Weng, Behrman, Healey, Barry, Lipzen, Bauer, Sharma, Jenkins, Schmutz, Fritsch, Juenger. "QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient". 

doi:10.1073/pnas.1821543116

Pollen development at high temperature and role of carbon and nitrogen metabolites Pollen development at high temperature and role of carbon and nitrogen metabolites

Plant Cell & Environment

May 11, 2019

James Santiago and Thomas Sharkey. "Pollen development at high temperature and role of carbon and nitrogen metabolites."

doi.org/10.1111/pce.13576

Elevated temperatures cause loss of seed set in common bean (Phaseolus vulgaris L.) potentially through the disruption of source-sink relationships Elevated temperatures cause loss of seed set in common bean (Phaseolus vulgaris L.) potentially through the disruption of source-sink relationships

BMC Genomics

April 24, 2019

Soltani, Weraduage, Sharkey and Lowry. "Elevated temperatures cause loss of seed set in common bean (Phaseolus vulgaris L.) potentially through the disruption of source-sink relationships."

doi: 10.1186/s12864-019-5669-2

Arabidopsis defense mutant ndr1-1 displays accelerated development and early flowering mediated by the hormone gibberellic acid Arabidopsis defense mutant ndr1-1 displays accelerated development and early flowering mediated by the hormone gibberellic acid

Plant Science

April 11, 2019

Dhar et al. "Arabidopsis defense mutant ndr1-1 displays accelerated development and early flowering mediated by the hormone gibberellic acid."

doi: 10.1016/j.plantsci.2019.04.006

RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids

mSystems

April 1, 2019

Dunivin, Choi, Howe, and Shade. "RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids" published in mSystems

doi: 10.1128/mSystems.00349-18

Identification of QTL Associated with Drought Tolerance in Andean Common Bean Identification of QTL Associated with Drought Tolerance in Andean Common Bean

Crop Science

March 21, 2019

I.D. Onziga, S.T. Nkalubo, and J.D. Kelly "Identification of QTL Associated with Drought Tolerance in Andean Common Bean."

doi: 10.2135/cropsci2018.10.0604

Exceptional subgenome stability and functional divergence in allotetraploid teff, the primary cereal crop in Ethiopia Exceptional subgenome stability and functional divergence in allotetraploid teff, the primary cereal crop in Ethiopia

bioRxiv

March 18, 2019

VanBuren et al. "Exceptional subgenome stability and functional divergence in allotetraploid teff, the primary cereal crop in Ethiopia."

doi: 10.1101/580720

A Cytosolic Bypass and G6P Shunt in Plants Lacking Peroxisomal Hydroxypyruvate Reductase A Cytosolic Bypass and G6P Shunt in Plants Lacking Peroxisomal Hydroxypyruvate Reductase

Plant Physiology

March 18, 2019

J. Li, S.M. Weraduwage, A.L. Preiser, S. Tietza, S.E. Weise, D.D. Stranda, J.E. Froehlich, D.M. Kramer, J. Hu, T.D. Sharkey. "A Cytosolic Bypass and G6P Shunt in Plants Lacking Peroxisomal Hydroxypyruvate Reductase."

doi: 10.1104/pp.19.00256

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Phytobiomes Journal

March 13, 2019

Bell et al. "Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities."

doi: 10.1094/PBIOMES-01-19-0006-W

Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants

Plant Physiology

March, 2019

VanBuren, Pardoners, Wai, Evans, and Bartels. "Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants."

doi: 10.1104/pp.18.01420

Mechanisms of a locally adaptive shift in allocation among growth, reproduction, and herbivore resistance in Mimulus guttatus Mechanisms of a locally adaptive shift in allocation among growth, reproduction, and herbivore resistance in Mimulus guttatus

International Journal of Organic Evolution

February 21, 2019

D.B. Lowry, D. Popovic, D.J. Brennan, & L.M. Holeski "Mechanisms of a locally adaptive shift in allocation among growth, reproduction, and herbivore resistance in Mimulus guttatus."

doi.org/10.1111/evo.13699